You can run this app online to explore own data and the data from the paper at https://kons.shinyapps.io/trees/.
Download and run locally:
git clone https://github.com/henssenlab/TreeShapedRearrangementsShinyApp.git
cd TreeShapedRearrangementsShinyApp
Rscript -e 'shiny::runApp("app.R", launch.browser=TRUE)'
Requirements:
- R 3.5.1
- shiny 1.2.0
- ggplot2 3.1.0
- dplyr 0.8.0.1
- tidyr 0.8.3
- circlize 0.4.5
- DT 0.5
Contact: henssenlab@gmail.com