A GUI frontend to map NGS sequencing data using HISAT2.
- Dynamic queuing to add mapping jobs on the fly
- Presets for processing: Genomic, RNASeq, shRNA data
- Loading mapping parameters from previous mapping runs
- Autodownload indexed reference libraries
- Mapping parameter previews
- Multi-threading (a HISAT2 feature)
This software includes HISAT2 executable. http://ccb.jhu.edu/software/hisat2/index.shtml
Kim D, Langmead B and Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nature Methods 2015
Copyright (c) 2016 Venkatramanan Krishnamani, Robert C. Piper, Mark Stamnes
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