Skip to content

Issues: databio/pypiper

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

50 Open 111 Closed
50 Open 111 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add nofail to Stage brainstorming enhancement question
#218 opened Apr 11, 2024 by vreuter
@vreuter
Idea: "describe" a pipeline brainstorming design enhancement question
#217 opened Apr 8, 2024 by vreuter
Running tests locally generates (or changes?) outputs that are not .gitignored
#214 opened Feb 18, 2024 by vreuter
1
Pipeline log file could collide with filepath given to logmuse
#212 opened Feb 17, 2024 by vreuter
1
@vreuter
2
logger_kwargs isn't used in one branch of the pipeline manager setup bug priority-low
#211 opened Feb 17, 2024 by vreuter
1
3
Critical bugs with reporting results bug priority-high
#209 opened Feb 17, 2024 by nsheff
3
docs outdated? docs
#208 opened Feb 15, 2024 by nsheff
2
KeyError: 'Time' when using pipestat via pypiper
#207 opened Feb 15, 2024 by nsheff
6
unifying pipestat config with pipestat constructor enhancement
#206 opened Feb 15, 2024 by nsheff
@donaldcampbelljr
2
multi=False causes Errno 29 illegal seek during pytest teardown bug priority-high
#205 opened Feb 14, 2024 by donaldcampbelljr
4
report_result docstrings for value is inaccurate
#204 opened Feb 13, 2024 by donaldcampbelljr
2
DeprecationWarning for many regex patterns / escape sequences
#203 opened Dec 28, 2023 by vreuter
Test assertions should use constant for default sample name tests
#194 opened Jul 7, 2023 by vreuter
"start-point" is not included in the "checkpoint" group bug
#193 opened Jul 7, 2023 by vreuter
In minimal use case, add_pypiper_args fails when composed with logmuse.add_logging_options brainstorming bug
#192 opened Jul 7, 2023 by vreuter
1
Documentation of the key method to implement to create a Pipeline type is wrong bug docs
#191 opened Jul 6, 2023 by vreuter
1
Can Pypiper generate a DAG to guide the execution of commands that comprise a pipeline?
#189 opened Jun 18, 2023 by zhangzhen
4
During testing, logging errors are generated: "ValueError: I/O operation on closed file"
#186 opened Jun 13, 2023 by donaldcampbelljr
Tests should clean up after running
#185 opened Jun 12, 2023 by donaldcampbelljr
3
AttributeError: module 'pypiper' has no attribute 'add_pypiper_args'
#183 opened Feb 16, 2023 by wilfriedguiblet
2
Docker feature doesn't work on macOS
#172 opened Aug 26, 2020 by nsheff
1
compressed output brainstorming
#171 opened Mar 5, 2020 by nsheff
Rename 'total elapsed time'
#170 opened Feb 3, 2020 by stolarczyk
@stolarczyk
time accumulation from profile is inaccurate bug
#165 opened Aug 12, 2019 by nsheff
@stolarczyk
6
initialize profile only after first cmd
#164 opened Aug 12, 2019 by nsheff
1
ProTip! Follow long discussions with comments:>50.