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Segmentation (no CLI) #106

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Segmentation (no CLI) #106

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edyoshikun
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@edyoshikun edyoshikun commented Nov 15, 2023 •
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This PR allows one to use Cellpose segmentation with and without slurmkit. I added a yml config that points to the nucleus and membrane models and a function that performs the segmentation on czyx_arrays.

  • There is no current CLI call for this, but we can set it up if needed.
  • Tests for the functions

@edyoshikun edyoshikun marked this pull request as draft November 16, 2023 01:51
@edyoshikun edyoshikun changed the base branch from main to stabilization_yml December 8, 2023 23:48
@edyoshikun edyoshikun mentioned this pull request Dec 9, 2023
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@edyoshikun edyoshikun changed the title Cellpose Segmentation with slurmkit Segmentation (no CLI) Dec 9, 2023
@edyoshikun edyoshikun marked this pull request as ready for review December 9, 2023 01:03
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