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33 Open 31 Closed
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Issues list

Registration: existing plugin analysis Software development needed for data analysis
#136 opened Apr 2, 2024 by ziw-liu
Cannot apply affine transform analysis Software development needed for data analysis bug Something isn't working
#133 opened Feb 22, 2024 by ziw-liu
1
1
bump iohub dependencies
#127 opened Jan 23, 2024 by edyoshikun
1
Registration: in estimate_affine check that selected points are not outside of the data volume when in grid mode
#126 opened Jan 17, 2024 by ieivanov
Registration: check how apply_affine handles positions will all nans or zeros
#125 opened Jan 17, 2024 by ieivanov
Registration: find better cropping algorithm
#124 opened Jan 17, 2024 by ieivanov
Refactor and unify reconstruction calls
#123 opened Jan 17, 2024 by ieivanov
@talonchandler @edyoshikun
@ieivanov @ziw-liu
CLI renaming
#122 opened Jan 17, 2024 by ieivanov
Registration: rename target to fixed and source to moving to match convention in other image registration pipelines
#121 opened Jan 17, 2024 by ieivanov
update-scale-metadata CLI call needs a docstring
#113 opened Dec 12, 2023 by ieivanov
1
Merging the PRs
#112 opened Dec 9, 2023 by edyoshikun
1 of 5 tasks
Slurmkit scripts slowing down the I/O
#111 opened Dec 5, 2023 by edyoshikun
Mantis processing pipeline
#110 opened Dec 4, 2023 by edyoshikun
1
Deskew configuration file's px_to_scan_ratio parameter is redundant with scale metadata
#101 opened Sep 22, 2023 by talonchandler
Plot bleaching estimates with correct time and/or per volume units
#96 opened Aug 16, 2023 by talonchandler
2
Need a pipeline to easily append new channels to existing stores
#84 opened Aug 10, 2023 by edyoshikun
Cannot open two instances of micromanager wontfix This will not be worked on
#77 opened Aug 6, 2023 by edyoshikun
Rename settings files to config files and clean up examples folders documentation Improvements or additions to documentation enhancement New feature or request
#68 opened Jul 25, 2023 by ieivanov 0.1.0: 4D phase + fluorescence imaging of 10 wells/positions over 24 hours.
@ieivanov
Add tests for mantis acquisition engine enhancement New feature or request
#66 opened Jul 21, 2023 by ieivanov
@ieivanov
Develop image-based autofocus for LF arm enhancement New feature or request hardware Plans for new hardware development and troubleshooting
#63 opened Jul 21, 2023 by ieivanov
Default number of workers for multiprocessing
#62 opened Jul 21, 2023 by ieivanov
@talonchandler @edyoshikun
6
Mantis acq fails silently if wrong config group / config name is provided bug Something isn't working
#60 opened Jul 18, 2023 by ieivanov
@ieivanov
Merge slurm deskew with mantis deskew CLI call analysis Software development needed for data analysis enhancement New feature or request
#57 opened Jul 17, 2023 by ieivanov
@talonchandler @edyoshikun
1
IPC diagram documentation Improvements or additions to documentation meta
#43 opened May 22, 2023 by ziw-liu
1
multiprocessing model for mantis analysis Software development needed for data analysis meta question Further information is requested
#27 opened Apr 26, 2023 by mattersoflight
2
ProTip! Find all open issues with in progress development work with linked:pr.