Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Workaround for setup-miniconda failing to install mamba on ubuntu #506

Conversation

AngieHinrichs
Copy link
Member

pangolin github action tests have been failing on ubuntu for about a week now (?) not because of anything in pangolin, but because the conda-incubator/setup-miniconda action's conda command to install mamba fails with a ton of cryptic conflict errors. I found that removing mamba-version: "*" from pangolin.yml would prevent the crash, but it would be nice to keep mamba in the CI too. I found a nice report of this issue, including suggested workarounds: conda-incubator/setup-miniconda#274 and indeed the first suggested workaround (replacing mamba-version: "*" with miniforge-variant: Mambaforge) worked.

…failures in mamba installation during setup.
@AngieHinrichs
Copy link
Member Author

@pvanheus I think you were the original author of .github/workflows/pangolin.yml a couple years ago including the mamba-version: "*". Does this change look OK to you? I don't know much about github actions or the various flavors of condas and forges, I'm just following what I saw in conda-incubator/setup-miniconda#274 because it works. Thanks! [I tried to add you as a reviewer but it didn't accept 'pvanheus']

@AngieHinrichs
Copy link
Member Author

If I don't hear any objections in the next day I'll just merge this. 🙂

@AngieHinrichs AngieHinrichs removed the request for review from aineniamh February 5, 2023 05:05
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant