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Achievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor
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@cov-lineages
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Pinned

  1. CDCgov/SARS-CoV-2_Sequencing CDCgov/SARS-CoV-2_Sequencing Public

    A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.

    Perl 344 83

  2. ucscGenomeBrowser/kent ucscGenomeBrowser/kent Public

    UCSC Genome Browser source tree. Stable branch: "beta".

    C 208 84

  3. cov-lineages/pangolin cov-lineages/pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    Python 413 108

  4. yatisht/usher yatisht/usher Public

    Ultrafast Sample Placement on Existing Trees

    C++ 117 40

  5. nextstrain/ncov-ingest nextstrain/ncov-ingest Public

    A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

    Python 34 21

  6. russcd/USHER_DEMO russcd/USHER_DEMO Public

    5 3