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62 Open 355 Closed
62 Open 355 Closed
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Issues list

trying to integrate bionlp processors from reach in odinson
#802 opened Oct 15, 2023 by Crispae
5
Compiler warnings
#797 opened Jun 28, 2023 by kwalcock
@kwalcock
1
Mentions with duplicate IDs are removed upon deserialization
#794 opened Mar 30, 2023 by kwalcock
2
Reach crashes on input of large nxml files with a stack overflow
#792 opened Mar 16, 2023 by kwalcock
Long antecedent chains will blow the stack
#791 opened Mar 16, 2023 by kwalcock
4
Large files break serial-json output
#790 opened Mar 11, 2023 by kwalcock
Mentions should be sorted before output
#787 opened Mar 4, 2023 by kwalcock
Triggers aren't converted to Bio- or Coref-Mentions and don't survive serialization
#785 opened Mar 2, 2023 by kwalcock
2
Failing test is not actually tested
#784 opened Mar 1, 2023 by kwalcock
@kwalcock
1
RunReachCLI gets stuck with specific nxml files
#783 opened Feb 22, 2023 by guerrerosimonl
6
Let BioNLPTokenizerPostProcessor mutant detection match Reach rules #49
#782 opened Feb 17, 2023 by kwalcock
BioNLPProcessor.annotate fails when withRuleNER is set to false
#781 opened Feb 17, 2023 by kwalcock
1
Why is testing done with a script?
#779 opened Jan 5, 2023 by kwalcock
2
Wrong field in PubmedAbstractIndexer
#771 opened Jun 30, 2022 by kwalcock
@enoriega
1
Difficulty installing reach through sbt
#758 opened Jul 9, 2021 by djinnome
16
bioresources should be standard text files, version controlled, directly readable, etc.
#743 opened Mar 31, 2021 by kwalcock
5
Possible infinite loop in serial-json output
#736 opened Jan 27, 2021 by kwalcock
@kwalcock
4
Allow BioProcess as controller?
#682 opened Apr 27, 2020 by bgyori
1
Case-sensitive handling of stopwords and overrides
#680 opened Apr 24, 2020 by bgyori
6
Misleading extraction of siRNA descriptions as self-activations or inhibitions
#646 opened Dec 18, 2019 by johnbachman
1
Problems interpreting results
#640 opened Oct 11, 2019 by SSicaaJL
1
NxmlReader error | No roots in graph
#634 opened Jul 14, 2019 by RohitChattopadhyay
5
Subject/object roles reversed.
#617 opened Dec 11, 2018 by johnbachman
1
Words like "expression" and "overexpression" shouldn't be flagged as entity modifications in progress
#606 opened Nov 12, 2018 by johnbachman
@enoriega
8
Feedback neede: potentially wrong test -- 4 events found instead of expected 2
#601 opened Nov 5, 2018 by maxaalexeeva
@marcovzla
2
ProTip! Adding no:label will show everything without a label.