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Brandon Sinn edited this page May 20, 2021 · 2 revisions

Welcome to the ISSRseq wiki! Use the sidebar to the right to find individual pages for each step of the pipeline as well as downstream analyses using the supplied R script.

Installation

Pipeline Steps

1a. ISSRseq_AssembleReference
1b. ISSRseq_ReferenceBased
2. ISSRseq_CreateBAMs
3. ISSRseq_AnalyzeBAMs
4. ISSRseq_CreateMatrices
5. ISSRseq R Analyses

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