log instead of print

examples/convert_tiffs_to_zarr.py

@@ -7,6 +7,8 @@
 
 import shutil
 
+from loguru import logger
+
 from stack_to_chunk import MultiScaleGroup
 from stack_to_chunk.io_helpers import load_env_var_as_path, read_tiff_stack_with_dask
 
@@ -31,24 +33,27 @@
 
 
 if __name__ == "__main__":
-
     tiff_files = sorted(channel_dir.glob("*.tif"))
     # Create a folders for the subject and channel in the output directory
     zarr_file_path = output_dir / subject_id / f"{subject_id}_{channel}.zarr"
     if zarr_file_path.exists():
-        print(f"Deleting existing {zarr_file_path}")
+        logger.info(f"Deleting existing {zarr_file_path}")
         shutil.rmtree(zarr_file_path)
 
     # Create a MultiScaleGroup object (zarr group)
     group = MultiScaleGroup(
         zarr_file_path,
         name=f"{subject_id}_{channel}",
         spatial_unit="micrometer",
-        voxel_sizes=(3, 3, 3),
+        voxel_size=(3, 3, 3),
     )
 
     # Read the tiff stack into a dask array
     da_arr = read_tiff_stack_with_dask(channel_dir)
+    logger.info(
+        f"Read tiff stack into Dask array with shape {da_arr.shape}, "
+        f"dtype {da_arr.dtype}, and chunk sizes {da_arr.chunksize}"
+    )
 
     # Add the dask array to the zarr group
     group.add_full_res_data(

ruff.toml

@@ -29,14 +29,12 @@ per-file-ignores = {"docs/*" = [
     "D400",
     "D415",
     "T201", # `print` found
+], "examples/*" = [
+    "INP001", # is part of an implicit namespace package
 ], "test_*" = [
     "D103", # Missing docstring in public function
     "INP001", # is part of an implicit namespace package
     "S101",
 ]}
-select = [
-    "ALL",
-]
-isort.known-first-party = [
-    "stack_to_chunk",
-]
+select = ["ALL"]
+isort.known-first-party = ["stack_to_chunk"]