Commits on Apr 25, 2024

1. Optimize cell detection (#398) …

   * Replace coord map values with numba list/tuple for optim.
   
   * Switch to fortran layout for faster update of last dim.
   
   * Cache kernel.
   
   * jit ball filter.
   
   * Put z as first axis to speed z rolling (row-major memory).
   
   * Unroll recursion (no perf impact either way).
   
   * Parallelize cell cluster splitting.
   
   * Parallelize walking for full images.
   
   * Cleanup docs and pep8 etc.
   
   * Add pre-commit fixes.
   
   * Fix parallel always being selected and numba function 1st class warning.
   
   * Run hook.
   
   * Older python needs Union instead of |.
   
   * Accept review suggestion.
   
   Co-authored-by: Alessandro Felder <alessandrofelder@users.noreply.github.com>
   
   * Address review changes.
   
   * num_threads must be an int.
   
   ---------
   
   Co-authored-by: Alessandro Felder <alessandrofelder@users.noreply.github.com>

   

   matham and alessandrofelder committed Apr 25, 2024
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