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75 Open 139 Closed
75 Open 139 Closed
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Issues list

Move data loading code to brainglobe_utils.image_io.load enhancement New feature or request
#405 opened Apr 19, 2024 by adamltyson
[BUG] Intermittent Segmentation Faults on CI bug Something isn't working
#404 opened Apr 18, 2024 by willGraham01
12
[Feature] Benchmark napari versus brainmapper code enhancement New feature or request
#391 opened Feb 27, 2024 by alessandrofelder
Downloading the trained model crashes if the model directory already exists enhancement New feature or request
#390 opened Feb 23, 2024 by adamltyson
[Feature] Refactor so THRESHOLD and SOMA_CENTRE_VALUE are defined in one place enhancement New feature or request
#387 opened Feb 16, 2024 by alessandrofelder
[Feature] Allow the user to select points from more than one layer at once in the curation interface enhancement New feature or request
#362 opened Jan 16, 2024 by adamltyson
2
Update the sample data cellfinder-napari Issue concerns the napari plugin enhancement New feature or request
#305 opened Dec 3, 2023 by adamltyson
Update to Python 3.11 cellfinder-core Issue concerns the core backend enhancement New feature or request
#266 opened Nov 29, 2023 by adamltyson
Update cell classification network cellfinder-core Issue concerns the core backend enhancement New feature or request
#267 opened Nov 29, 2023 by adamltyson
@IgorTatarnikov
1
Save models into e.g. .brainglobe/cellfinder/models cellfinder-core Issue concerns the core backend enhancement New feature or request
#268 opened Nov 24, 2023 by adamltyson
Investigate parameter combinations causing cellfinder to stall bug Something isn't working cellfinder-core Issue concerns the core backend
#270 opened Oct 12, 2023 by adamltyson
Benchmarks in CI [Feature] cellfinder-core Issue concerns the core backend enhancement New feature or request
#273 opened Jul 20, 2023 by sfmig
1
Add benchmarks for training [Feature] cellfinder-core Issue concerns the core backend enhancement New feature or request
#274 opened Jul 20, 2023 by sfmig
@sfmig
Add benchmarks for the main function [Feature] cellfinder-core Issue concerns the core backend enhancement New feature or request
#275 opened Jul 20, 2023 by sfmig
@sfmig
[BUG] mypy needs stub file for cellfinder-core bug Something isn't working cellfinder-core Issue concerns the core backend
#278 opened Jul 6, 2023 by willGraham01
Consider moving away from TensorFlow cellfinder-core Issue concerns the core backend enhancement New feature or request
#279 opened Jul 5, 2023 by adamltyson
2
Avoid hard-coding of ~/.cellfinder cellfinder-core Issue concerns the core backend
#280 opened Jul 3, 2023 by alessandrofelder
Error is raised if no cells are detected. bug Something isn't working cellfinder-napari Issue concerns the napari plugin
#306 opened May 23, 2023 by adamltyson
Move test data to gin and fetch via pooch cellfinder-core Issue concerns the core backend
#282 opened May 11, 2023 by alessandrofelder
Add appropriate typing or refactor get_cell_detector cellfinder-core Issue concerns the core backend enhancement New feature or request
#283 opened May 9, 2023 by alessandrofelder
De-duplicate test dependency lists cellfinder-core Issue concerns the core backend enhancement New feature or request
#284 opened Apr 28, 2023 by dstansby
Add tests for structure splitting code cellfinder-core Issue concerns the core backend enhancement New feature or request
#285 opened Apr 18, 2023 by dstansby
1
Add docs to structure splitting code cellfinder-core Issue concerns the core backend enhancement New feature or request
#286 opened Apr 18, 2023 by dstansby
Investigate replacing custom connected-component labelling with 3rd party library cellfinder-core Issue concerns the core backend enhancement New feature or request
#287 opened Apr 17, 2023 by dstansby
3
[Feature] Warn or error if ball_z or ball_xy_size is less than voxel sizes cellfinder-core Issue concerns the core backend enhancement New feature or request
#288 opened Apr 4, 2023 by dstansby
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