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naive attempt at fixing HDF5 #100

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merged 4 commits into from
Apr 30, 2024
Merged

naive attempt at fixing HDF5 #100

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d76a81d
naive attempt at fixing HDF5
alessandrofelder Apr 29, 2024
e4db17d
sanity check that hdf5 install needed
alessandrofelder Apr 29, 2024
d6c243f
Revert "sanity check that hdf5 install needed"
alessandrofelder Apr 29, 2024
cf40871
remove adding hdf to path
alessandrofelder Apr 29, 2024
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18 changes: 12 additions & 6 deletions .github/workflows/test_and_deploy.yml
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Expand Up @@ -36,20 +36,26 @@ jobs:
# Run tests on ubuntu across all supported versions
python-version: ["3.9", "3.10"]
os: [ubuntu-latest]
# Include at least one MacOS and Windows test
# Include a Windows test and old/new Mac runs
include:
- os: macos-latest
python-version: "3.10"
- os: windows-latest
python-version: "3.10"
- os: macos-13
python-version: "3.10"
- os: macos-latest
python-version: "3.10"
- os: windows-latest
python-version: "3.10"
steps:
# Cache the tensorflow model so we don't have to remake it every time
- name: Cache tensorflow model
uses: actions/cache@v3
with:
path: "~/.cellfinder"
key: models-${{ hashFiles('~/.cellfinder/**') }}

# install additional Macos dependencies
- name: install HDF5 libraries (needed on M1 Macs only)
if: matrix.os == 'macos-latest'
run: |
brew install hdf5
# Run tests
- uses: neuroinformatics-unit/actions/test@v2
with:
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