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Allow for changing cube size #45

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MysticElephant opened this issue Jul 19, 2022 · 0 comments
Open

Allow for changing cube size #45

MysticElephant opened this issue Jul 19, 2022 · 0 comments
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enhancement New feature or request migrated-from-cellfinder For issues that were inherited from the migration of cellfinder into this package.

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@MysticElephant
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MysticElephant commented Jul 19, 2022 •
edited

While utilizing this program, I realized that the cube depth was not customizable and was fixed at (50, 50, 20). I would like for the program to be able to support changing cube size. This should be allowed in the napari plugin when the files save, while training, and classification.

For the napari plugin curation, there should be a widget to change the value of cube width, depth, and height.

The reason for this request is that our team is working on brains that are quite small and wanted to test if reducing the cube size would improve accuracy. I feel like this would be useful for others that are in a similar position.

There are no alternatives for this.
@MysticElephant MysticElephant added the enhancement New feature or request label Jul 19, 2022
@MysticElephant MysticElephant mentioned this issue Aug 3, 2022
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willGraham01 referenced this issue in brainglobe/cellfinder Sep 1, 2023
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (#211)
421c89b 
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.0.280 → v0.0.281](astral-sh/ruff-pre-commit@v0.0.280...v0.0.281)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@willGraham01 willGraham01 transferred this issue from brainglobe/cellfinder Dec 13, 2023
@willGraham01 willGraham01 added the migrated-from-cellfinder For issues that were inherited from the migration of cellfinder into this package. label Dec 13, 2023
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enhancement New feature or request migrated-from-cellfinder For issues that were inherited from the migration of cellfinder into this package.
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@willGraham01 @MysticElephant