v1.2.4

Summary

• Adapted to using image loading and napari plugin header directly from brainglobe-utils.
• Maintenance and minor improvements to automated testing setup (CI).

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #171
• Add codecov token by @K-Meech in #173
• Add header from brainglobe-utils by @K-Meech in #172
• run CI on both types of Mac by @alessandrofelder in #174
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #175
• Update use of brainglobe-utils image IO by @adamltyson in #176

New Contributors

• @K-Meech made their first contribution in #173
• @alessandrofelder made their first contribution in #174

Full Changelog: v1.2.3...v1.2.4

v1.2.3

Bump to brainglobe-atlasapi dependency

bg-atlasapi has been renamed to brainglobe-atlasapi, so we now depend on the new package.

What's Changed

• bg-atlasapi -> brainglobe-atlasapi by @willGraham01 in #169

Full Changelog: v1.2.2...v1.2.3

v1.2.2

imio dependency removal

imio has been absorbed into brainglobe-utils, so now we depend directly on utils.

What's Changed

• Use the updated upload_pypi action by @IgorTatarnikov in #164
• Test job now requires linting by @IgorTatarnikov in #165
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #166
• Bring in line with other package CIs by @willGraham01 in #167
• Create CITATION.cff by @willGraham01 in #163
• Update imio dependency change by @willGraham01 in #168

New Contributors

• @IgorTatarnikov made their first contribution in #164

Full Changelog: v1.2.1...v1.2.2

v1.2.1

What's Changed

• Update GH actions badge by @adamltyson in #161
• Move qtpy utilities to brainglobe-utils by @adamltyson in #162

Full Changelog: v1.2.0...v1.2.1

v1.2.0

What's Changed

• Simplify and update readme by @adamltyson in #151
• Force headless display by @willGraham01 in #152
• Make test assertions approximate by @adamltyson in #154
• Use native dialogs when choosing/setting directories by @adamltyson in #153
• Remove functionality to load atlas by @adamltyson in #156
• Various small changes by @adamltyson in #157
• Report distance from track origin by @adamltyson in #158
• Update pypi documentation link by @adamltyson in #159
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #160

Full Changelog: v1.1.0...v1.2.0

v1.1.0

Minor (but breaking) change

The directory created by brainglobe-segmentation has been renamed from manual_segmentation to segmentation. This reflects compatibility with automated segmentation plugins.

To use this version with data saved with previous versions, you can rename the directory to segmentation manually.

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #148
• Remove references to manual segmentation by @adamltyson in #150

Full Changelog: v1.0.1...v1.1.0

Minor dependency update

Minor dependency updates

Updates the package dependencies to be compliant with internal BrainGlobe changes and updates to external packages like napari and pandas.

What's Changed

• Update dependencies in line with #143 by @willGraham01 in #144

Full Changelog: v1.0.0...v1.0.1

`brainglobe-segmentation` initial release

This package is a renaming of the now-deprecated brainreg-segment.

Please use brainglobe-segmentation instead of the old brainreg-segment name. This package contains all the same functionality as brainreg-segmentation.

For more information, please see our blog post.

Users may want to uninstall brainreg-segment from their environments following this update. If you do so, please also consider doing the following if you make use of any other BrainGlobe tools:

• Update brainreg to at least version 1.0.0
• Update cellfinder
• Remove brainreg-napari from your machine - it now comes bundled with brainreg versions >=1.0.0.

What's Changed

• Rename to brainglobe-segmentation by @willGraham01 in #139

Full Changelog: v0.2.19...v1.0.0

Renaming, please use `brainglobe-segmentation`

This package is being renamed!

Please use brainglobe-segmentation instead of the old brainreg-segment name. The functionality of this package it is no longer supported under the old name.

For more information, please see our blog post.

What's Changed

• Set pre-commit autoupdate frequency to monthly by @adamltyson in #128
• Delete .github/workflows/plugin_preview.yml by @adamltyson in #134
• Remove measurement code by @adamltyson in #135
• Migrate to npe2 by @adamltyson in #136
• Standardise use of atlas vs standard space by @adamltyson in #137
• Fix pandas FutureWarning by @adamltyson in #138
• Mark brainreg-segment package as deprecated in prep for renaming. by @willGraham01 in #140

New Contributors

• @willGraham01 made their first contribution in #140

Full Changelog: v0.2.18...v0.2.19

v0.2.18

What's Changed

• Update dependency (imlib -> brainglobe-utils) by @adamltyson in #109
• Add tooltips by @adamltyson in #104
• Warn user if data segmented in a different coordinate space by @adamltyson in #107
• Keyword args by @adamltyson in #108
• Refactor tests by @adamltyson in #115
• Add save option on analysis by @adamltyson in #114

Full Changelog: v0.2.17...v0.2.18