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validate_atlases.py additional_references error #275
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I think this should be added to the validation scripts, to check that the atlases have |
The warning is useful in this case, I think, @viktorpm
This suggests that there is an atlas (is it the human atlas or the one after in the validation list?) that hasn't been updated since we introduced the additional references concept in the code. How I think it is intended to work (for atlases with no additional references):
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@alessandrofelder, looks like the human atlas doesn't return what the allen mouse 100um atlas
allen human 500um atlas
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To fix the issue, I think (famous last words) that the human atlas just needs to be regenerated. It should then have the correct metadata. I think the issue stems from the fact that it hasn't been regenerated since the concept of additional references was added to the atlas API. |
I agree, but I couldn't find an easy fix for the script. I'll make it my priority to work on that (in a new PR). |
Describe the bug
validate_atlases.py
both in an interactive session on the HPC and as a submitted job I received this error:additional_references
related functions and tests in the local code to be able to run the validation.To Reproduce
Computer used (please complete the following information):
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