Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Remove namespace warning #106

Open
holtgrewe opened this issue May 4, 2023 · 2 comments
Open

Remove namespace warning #106

holtgrewe opened this issue May 4, 2023 · 2 comments
Milestone

Comments

@holtgrewe
Copy link
Contributor

The following namespace warning occurs when running tests. One probably has to migrate to "new style namespaces". The matplotlib library has a similar issue albeit not resolved this yet.

============================================================================================================================== warnings summary ===============================================================================================================================
../../../../opt/miniconda3/envs/seqrepo/lib/python3.8/site-packages/pkg_resources/__init__.py:121
../../../../opt/miniconda3/envs/seqrepo/lib/python3.8/site-packages/pkg_resources/__init__.py:121
  /opt/miniconda3/envs/seqrepo/lib/python3.8/site-packages/pkg_resources/__init__.py:121: DeprecationWarning: pkg_resources is deprecated as an API
    warnings.warn("pkg_resources is deprecated as an API", DeprecationWarning)

../../../../opt/miniconda3/envs/seqrepo/lib/python3.8/site-packages/biocommons/__init__.py:3
../../../../opt/miniconda3/envs/seqrepo/lib/python3.8/site-packages/biocommons/__init__.py:3
  /opt/miniconda3/envs/seqrepo/lib/python3.8/site-packages/biocommons/__init__.py:3: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('biocommons')`.
  Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
    pkg_resources.declare_namespace(__name__)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

@github-actions
Copy link

This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 7 days.

@github-actions github-actions bot added the stale Issue is stale and subject to automatic closing label Sep 18, 2023
@github-actions
Copy link

This issue was closed because it has been stalled for 7 days with no activity.

@github-actions github-actions bot closed this as not planned Won't fix, can't repro, duplicate, stale Sep 25, 2023
@reece reece added stale closed Issue was closed automatically due to inactivity and removed stale closed Issue was closed automatically due to inactivity labels Nov 27, 2023
@reece reece added this to the 0.7 milestone Nov 27, 2023
@reece reece reopened this Nov 27, 2023
@reece reece removed the stale Issue is stale and subject to automatic closing label Nov 27, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants