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Startup scripts still don't resolve correctly when symlinks #1973

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heuermh opened this issue Mar 28, 2018 · 0 comments
Open

Startup scripts still don't resolve correctly when symlinks #1973

heuermh opened this issue Mar 28, 2018 · 0 comments

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@heuermh
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heuermh commented Mar 28, 2018

After removing patches from the bioconda recipe for 0.23.0, the ADAM startup scripts still don't resolve correctly when symlinks

+ source /opt/conda/bin/activate /opt/conda/conda-bld/adam_1522259566898/_t_env
+ /bin/bash -x -e /opt/conda/conda-bld/adam_1522259566898/test_tmp/run_test.sh
+ adam-submit --help
/opt/conda/conda-bld/adam_1522259566898/_t_env/bin/adam-submit: line 54: /opt/conda/conda-bld/adam_1522259566898/_t_env/bin/find-adam-assembly.sh: No such file or directory

https://circleci.com/gh/bioconda/bioconda-recipes/6599?utm_campaign=vcs-integration-link&utm_medium=referral&utm_source=github-build-link
@heuermh heuermh added this to the 0.24.1 milestone Mar 28, 2018
@heuermh heuermh mentioned this issue Mar 28, 2018
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@heuermh heuermh modified the milestones: 0.24.1, 0.25.0 Apr 11, 2018
@heuermh heuermh mentioned this issue Aug 29, 2018
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@heuermh heuermh modified the milestones: 0.26.0, 1.0.0 Jan 14, 2019
@heuermh heuermh mentioned this issue Oct 11, 2019
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@heuermh heuermh removed this from the 1.0.0 milestone May 9, 2022
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