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32 Open 1,164 Closed
32 Open 1,164 Closed
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Issues list

Missing Fastq reads
#2385 opened Mar 24, 2023 by SidWeng
1
StackOverflowError in avro SpecificDatumWriter
#2349 opened Nov 29, 2021 by heuermh
1
Add Scala 2.13 to build
#2335 opened Oct 12, 2021 by heuermh
Spare not needed groupBy when calling toFragments() on AlignmentDataset
#2281 opened Nov 7, 2020 by benraha
4
Improve Ensembl VEP mapping to TranscriptEffect
#2279 opened Oct 28, 2020 by heuermh
1
saveAsSam converts null mapping qualities to 0 instead of 255
#2272 opened Sep 4, 2020 by heuermh
I'm failing to use this package
#2225 opened Oct 10, 2019 by Hoeze
11
Save as CRAM precondition incorrectly fails on sorted Parquet input
#2214 opened Sep 25, 2019 by heuermh
Refactor Dataset save methods for consistency
#2199 opened Aug 26, 2019 by heuermh
2
Add missing VariantContextDataset.save method
#2198 opened Aug 26, 2019 by heuermh
Ensembl Variant Effect Predictor annotations support
#2150 opened May 14, 2019 by znikasz
1
3
API doc links in readthedocs are broken
#2131 opened Feb 25, 2019 by akmorrow13
3
TypeError: 'JavaPackage' object is not callable
#2122 opened Feb 19, 2019 by Shekharrajak
13
s3a URL not working
#2096 opened Dec 5, 2018 by dekinsitro
5
Evenly Repartioning AlignmentRecordRDD fails with IllegalArgumentException on sorted RDD
#2063 opened Oct 11, 2018 by pauldwolfe
1
Cannot run pyadam adam-distribution-spark2_2.11-0.24.0 binary distribution
#2041 opened Aug 31, 2018 by mtdeguzis
4
Mark Duplicates implemented in Spark SQL
#2023 opened Jul 27, 2018 by jondeaton
1
Python/R pipe APIs return wrong GenomicRDD type bug
#2012 opened Jul 6, 2018 by fnothaft
@fnothaft
Startup scripts still don't resolve correctly when symlinks
#1973 opened Mar 28, 2018 by heuermh
Inconsistent counts for shuffleRegionJoin without Sequence Dictionaries
#1956 opened Mar 17, 2018 by heuermh
3
Timeout waiting for connection from pool for 1000 genomes vcf on AWS
#1951 opened Mar 11, 2018 by akmorrow13
9
Support loadIndexedBam from R enhancement
#1947 opened Mar 7, 2018 by fnothaft
Surface VariantContextRDD loaders in Python and R enhancement
#1945 opened Mar 7, 2018 by fnothaft
Pipe API without expectation that return value is GenomicRDD enhancement
#1788 opened Oct 30, 2017 by heuermh
5
Dealing with globbed paths should recursively call "isDirectory/listStatus" enhancement pick me up!
#1775 opened Oct 24, 2017 by fnothaft
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