A command line tool to identify and annotate small proteins in genomes and metagenomes.
SmORFinder can be installed with pip:
pip install smorfinder
You can then download the necessary data files just by running the command
smorf
You can run SmORFinder on a single isolate genome with the command:
smorf single myGenome.fna
And you can run it on a metagenome, with multiple threads, with the command:
smorf meta myMetagenome.fna
This is a web server that allows you to download pre-computed smORF annotations for hundreds of thousands of RefSeq genomes and HMP metagenomes. It can also annotate your own genomes and annotations through a web form with SmORFinder.
