bhattlab
Popular repositories
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kraken2_classification
kraken2_classification PublicSnakemake workflow for metagenomic classification with Kraken2
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bhattlab_workflows
bhattlab_workflows PublicComputational workflows for metagenomics tasks, by the Bhatt lab
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StrainSifter
StrainSifter PublicA straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
Repositories
Showing 10 of 29 repositories
- bhattlab_workflows_nf Public
Computational workflows for metagenomics tasks, packaged with Nextflow and Singularity.
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- AWIGen2Microbiome Public
Repository for the AWI-Gen 2 microbiome project workflows, analysis, and results.
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- SmORFinder Public
A command line tool to identify and annotate small proteins in microbial sequencing datasets.
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- SouthAfrica Public