Skip to content

alex-merge/PyFastaTools

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

7 Commits
 
 
 
 
 
 
 
 

Repository files navigation

PyFastaTools

This a little class I made to get some information on a .fasta or a .fastq file.

It can give you some biological statistics like the proportion of G and C in each sequence. It also allow you to do some quality check filtering on your sequences. One tool also allows you to translate your sequences and search for ORF in them. Finally, it comes with a pattern searching.

The class build an internal dataframe with usefull informations that can be retrieved and easily analyzed.

The code is fully commented and comes with some samples to see how it works :)

It uses 2 packages : NumPy and Pandas.

Releases

No releases published

Packages

No packages published

Languages