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75 Open 227 Closed
75 Open 227 Closed
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Issues list

Provision of enzymes
#349 opened May 9, 2024 by molinfzl
Treat hap1 and hap2 to as "parents" for diploid.sh
#348 opened Mar 19, 2024 by sarjopp
Not able to see the specified normalizations (using -k) in the hic file after juicertools pre bug
#347 opened Mar 13, 2024 by ashishjain1988
Juicer changes chromosome names bug
#346 opened Mar 4, 2024 by jeramiahsmith
1
Sorted file and dups/no dups files do not add up in dedup step bug
#345 opened Feb 27, 2024 by WeiCSong
1
Trio-binning genome assembly and juicer error
#344 opened Feb 20, 2024 by Larkinhi
samtools sort: fail to open "./samtools.36604.8950.tmp.1019.bam": Too many open files bug
#343 opened Feb 19, 2024 by sanjin725
2
insufficient memory for the Java Runtime Environment - CPU bug
#341 opened Feb 6, 2024 by james-vincent
1
.hic file chr names NC_000001.11
#340 opened Jan 30, 2024 by Luzmist
error with Java when generating out_JBAT.assembly following Yahs protocol (Yet another HIC scaffolding tool) bug
#337 opened Nov 13, 2023 by palasities
Error while Normalizations
#335 opened Oct 3, 2023 by Kaustav-93
1
Installation files absent
#334 opened Sep 28, 2023 by HaikuoLi
1
Juicer memory usage
#333 opened Sep 26, 2023 by Xinxin0314
More restriction enzyme sites of Arima than Juicer provided, how to modified juicer.sh bug
#332 opened Sep 26, 2023 by QianghuiZhu
4
The sample data link in the wiki docs are no longer accessible bug
#331 opened Sep 23, 2023 by jprorama
***! Error! Either inter.hic or inter_30.hic were not created
#330 opened Sep 20, 2023 by yuntan1992
4
Java memory error bug
#329 opened Sep 19, 2023 by hwamu
awk error bug
#328 opened Sep 15, 2023 by ratheraarif
After manual correction of juicebox convert to fasta
#327 opened Sep 7, 2023 by ABDULLAHGUJJAR
sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. bug
#326 opened Aug 30, 2023 by MovmntR
GPU/CUDA Installation Not Detected
#325 opened Aug 29, 2023 by tarak77
2
Calculating norms for zoom BP_100000java.lang.ArrayIndexOutOfBoundsException: 1296
#324 opened Aug 23, 2023 by maize821
1
> Unknown command: statistics
#323 opened Aug 9, 2023 by qdu-beep
1
awk: fatal: cannot open file /splits/hic.fastq.gz_norm.txt' for reading (No such file or directory)
#322 opened Aug 6, 2023 by fengyuanli304
Is it possible to calculate interchromosomal interactions using juicer?
#321 opened Aug 3, 2023 by rahulk87
1
ProTip! What’s not been updated in a month: updated:<2024-04-09.