Skip to content

Issues: Teichlab/tracer

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

27 Open 51 Closed
27 Open 51 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Some issues at Trinity Phase 1 about insilico_read_normalization.pl
#124 opened Sep 27, 2023 by lsy5011
tracer summarise fails with uninformative error
#123 opened Sep 25, 2023 by svalkiers
1
Output CDR3 all is NA
#121 opened Jul 19, 2023 by RuonanTian
How to match my TCR sequence reported by TraCer with my 10X Cellranger vdj output Clonalcall?
#120 opened Sep 8, 2022 by MugenQin
Tracer assemble gives two chains with identical CDR3 sequence as different
#118 opened Apr 5, 2022 by diitaz93
Can tracer skip assemble
#116 opened Nov 19, 2021 by TangLabsysu2020
1
Java DISPLAY variable error when running tracer
#115 opened Nov 11, 2021 by tiagobrc
1
Newer python versions and Bio Alphabet
#112 opened May 23, 2021 by NathanSiemers
5
Running containerized tracer using singularity
#109 opened Dec 9, 2020 by carlo-deintinis
4
IGBLAST stops working with message: WORKER: T4 BATCH # 1 CEXCEPTION: Error pre-fetching sequence data and WORKER: T2 BATCH # 1 CEXCEPTION: Attempt to access NULL pointer.
#105 opened Oct 24, 2020 by jessicagamio
2
trinity_kmer_length config option not working
#102 opened Sep 25, 2020 by HumzaHemani
1
question about repertoire coverage/bias
#98 opened Dec 20, 2019 by jfx319
TraCeR on 10X cellranegr vdj output filtered_contig.fasta demultiplexed files
#95 opened Oct 15, 2019 by arutik
8
KeyError message in assemble
#90 opened May 13, 2019 by micans
5
Include leader sequences in assembly?
#88 opened Apr 22, 2019 by jfass
1
FutureWarning: in the final step of ##Filtering by read count##
#81 opened Nov 2, 2018 by SeadonXing
Adding assembled_file option assembly process
#77 opened Sep 6, 2018 by JohnMCMa
1
Tracer summarise output
#75 opened Aug 27, 2018 by YarsnC
3
Regenerate test output with new CDR3 code enhancement
#74 opened Aug 7, 2018 by mstubb
Running igblast returns an error
#70 opened Jun 29, 2018 by ghost
5
IgBLAST update in Docker image?
#67 opened Apr 17, 2018 by wyattmcdonnell
10
igblastn and igblastp return an error
#65 opened Mar 13, 2018 by comrade1809
13
Improve --loci argument options enhancement
#62 opened Feb 14, 2018 by mstubb
@mstubb
2
Issue with tracer test
#60 opened Feb 12, 2018 by Edenapple
1
Add compatibility with Networkx v2.0 enhancement
#53 opened Oct 6, 2017 by mstubb
@mstubb
2
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.