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Teichmann Group

Sarah Teichmann's group at EMBL-EBI / Wellcome Trust Sanger Institute

154 followers
Cambridge, UK
http://www.teichlab.org

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scg_lib_structs scg_lib_structs Public

Collections of library structure and sequence of popular single cell genomic methods

HTML 384 85
cellphonedb cellphonedb Public archive

Python 338 105
bbknn bbknn Public

Batch balanced KNN

Python 135 23
MultiMAP MultiMAP Public

MultiMAP for integration of single cell multi-omics

Python 51 11
embl-single-cell-course-2016 embl-single-cell-course-2016 Public

Material for lecture at the EMBL Single Cell Course 2016

Jupyter Notebook 45 16

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Showing 10 of 60 repositories

scg_lib_structs Public
Collections of library structure and sequence of popular single cell genomic methods

HTML 384 85 1 0 Updated May 1, 2024
celltypist_wiki Public
Materials and scripts for building cell type encyclopedia table

Python 11 2 0 0 Updated Apr 26, 2024
lung-immune-cell-atlas Public
This is a folder containing information of the human fetal lung leukocyte atlas

HTML 2 1 0 0 Updated Apr 23, 2024
celltypist Public
A tool for semi-automatic cell type classification

Python 237 MIT 36 14 1 Updated Apr 22, 2024
Genes2Genes Public
Aligning gene expression trajectories of single-cell reference and query systems

Jupyter Notebook 17 MIT 3 0 2 Updated Apr 19, 2024
bracer Public
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

Python 37 22 17 (1 issue needs help) 6 Updated Apr 12, 2024
SKM_ageing_atlas Public

Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Apr 11, 2024
COVID-19_Challenge_Study Public

HTML 0 MIT 0 0 0 Updated Apr 10, 2024
treg-gut-niches Public
Data pre-processing and analysis scripts for the article "Immune microniches shape intestinal Treg function"

Jupyter Notebook 1 MIT 1 0 0 Updated Apr 3, 2024
TissueTag Public
Python package to interactively annotate histological images within a jupyter notebook

Jupyter Notebook 5 BSD-3-Clause 2 6 0 Updated Mar 21, 2024

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Jupyter Notebook Python R Shell HTML

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single-cell python scrna-seq machine-learning

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