Skip to content

Issues: ScalableCytometryImageProcessing/SCIP

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

13 Open 37 Closed
13 Open 37 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Is this pipeline actively maintained?
#53 opened Jan 19, 2024 by tatyana-perlova
1
Use pre-commit package for enforcement
#50 opened Jul 5, 2022 by MaximLippeveld
Specify different memory requirements for GPU workers in mpi mode enhancement New feature or request
#48 opened Mar 3, 2022 by MaximLippeveld
Implement possibility to refine masks after CellPose segmentation segmentation Relating to segmentation
#47 opened Feb 3, 2022 by MaximLippeveld
1
Switch to tifffile in multiframe tiff loader data-loading Relating to data loading
#44 opened Nov 1, 2021 by MaximLippeveld BII 2021
Add fluorescence intensity quality control plots to spot batch effects preprocessing Steps between raw data loading and segmentation.
#35 opened Aug 26, 2021 by MaximLippeveld
Compute CP MeasureImageQuality features to filter out abberant images prior to full computation preprocessing Steps between raw data loading and segmentation.
#34 opened Aug 25, 2021 by MaximLippeveld
Compute quantiles with random undersampling preprocessing Steps between raw data loading and segmentation.
#27 opened Aug 24, 2021 by MaximLippeveld BII 2021
Add per-image min-max normalization preprocessing Steps between raw data loading and segmentation.
#26 opened Aug 24, 2021 by MaximLippeveld BII 2021
Implement principal feature analysis enhancement New feature or request image-features Relating to image features
#13 opened Jul 15, 2021 by MaximLippeveld
Implement feature extraction that combines channels enhancement New feature or request image-features Relating to image features
#12 opened Jul 15, 2021 by MaximLippeveld BII 2021
Feature extraction from pretrained neural nets enhancement New feature or request image-features Relating to image features
#8 opened Jul 15, 2021 by MaximLippeveld
Add demo dataset for new users enhancement New feature or request
#1 opened Jul 14, 2021 by MaximLippeveld
ProTip! Add no:assignee to see everything that’s not assigned.