The complete analysis pipeline for the hyposmia project by Health After COVID-19 in Tyrol and CovILD Study Teams aiming at identification of recovery phenotypes of post-COVID-19 condition and resolution of post-COVID-19 olfactory dysfunction.
Please cite the repository, and our preprint (DOI: 10.1101/2022.06.02.22275932) or the peer-reviewed publication of the analysis results (DOI: 10.1007/s00405-023-08163-x). The raw .RData data files will be made available upon request to the study authors, Prof. Judith Löffler-Ragg and Prof. Raimund Helbok.
The following development packages are required to run the pipeline:
devtools::install_github('PiotrTymoszuk/soucer') ## script sourcing
devtools::install_github('PiotrTymoszuk/ExDA') ## exploratory data analysis and staristical hypothesis testing
devtools::install_github('PiotrTymoszuk/clustTools') ## factor analysis and unsupervised clustering
devtools::install_github('PiotrTymoszuk/somKernels') ## extra distances for self-organizing maps
devtools::install_github('PiotrTymoszuk/figur') ## management of figures and tables in Rmd documents
devtools::install_github('PiotrTymoszuk/trafo') ## handling of tabular data
devtools::install_github('PiotrTymoszuk/microViz') ## visualization
Source 'exec.R' to launch the entire pipeline:
source('exec.R')
The repository maintainer is Piotr Tymoszuk. Data requests should be addressed to Prof. Judith Löffler-Ragg and Prof. Raimund Helbok.