Dear flowSpy users:
To improve the identification of this package and avoid awkward duplication of names in some situations, we decided to change the name of flowSpy to CytoTree. The package name of CytoTree more fits the functional orientation of this software. The usage and update of flowSpy and CytoTree will be consistent until the end of Bioc 3.11. And for the 3.12 devel, flowSpy will be deprecated.
The package CytoTree has been added to Bioconductor (https://bioconductor.org/packages/CytoTree/), we recommend that users can download this package and replace flowSpy as soon as possible.
We apologized for the inconvenience.
flowSpy team
2020-07-09
The detailed rerunnable source code, raw FCS data and results for flowSpy base and time-course workflow.
This contains two datasets: (i) Basic. A thirteen-marker panel single-cell mass cytometry dataset obtained with healthy human bone marrow cells published by Bendall et al. (ii) Time-course. Time-course flow cytometry data obtained from the induction of the hematopoietic differentiation of the human embryonic stem cell (hESC) line HUES9 by monitoring ten cell surface markers at six time points.
# Please install git first
git clone https://github.com/JhuangLab/flowSpy-dataset.git
See the quick start tutorial of flowSpy, please visit Quick start of flowSpy.
See the basic tutorial of flowSpy, please visit Tutorial of flowSpy.
See time-course data analysis of flowSpy, please visit Time-course workflow of flowSpy.
If there is any error in installing or librarying the flowSpy package, please contact us via e-mail forlynna@sjtu.edu.cn