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205 Open 143 Closed
205 Open 143 Closed
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Issues list

Issue with hisatgenotype
#429 opened Apr 13, 2024 by Januaryyiyue
[Future request] hisat-3n table option to report conversions summarized to genomic feature or reads counts
#428 opened Apr 4, 2024 by paurosales
hisat2-build failed for Segmentation fault
#427 opened Apr 1, 2024 by yqlan
hisat2-build index for circRNA-seq
#426 opened Mar 27, 2024 by fengweimin-maker
Hisat-3N mapping quality
#425 opened Mar 7, 2024 by ZiggeyQi
hisat2 location does not exist
#424 opened Feb 20, 2024 by Thanatia
[Bug Report] hisat2-align exited with value 137, space complexity of hisat2
#423 opened Dec 11, 2023 by bayegy
ERR): "fastq file.fastq" does not exist. Exiting now ...
#422 opened Nov 24, 2023 by big-boo1
-np argument seemingly not working
#421 opened Nov 9, 2023 by brian-odonovan
Any plans to support Apple Silicon architecture?
#419 opened Sep 30, 2023 by itslittman
Please add the pbat option of hisat-3n
#416 opened Jul 23, 2023 by kekaiko
Output files(.snp, .haplotype) of hisat2_extract_snps_haplotypes_*.py are empty
#414 opened Jul 13, 2023 by jim83830
Feature request: Add support for xz and zstd
#412 opened Jun 22, 2023 by outpaddling
Repeat mapping with different result
#411 opened Apr 23, 2023 by xf78
error minimum intron length with hisat2 v. 2.2.1
#410 opened Mar 22, 2023 by ConcettaDe4
Align ATAC-seq with Hisat2?
#409 opened Feb 23, 2023 by yjiang296
"Local Graph Exploded" warning for hisat2 build using --snp,--haplotype,--exon and --ss.
#404 opened Feb 2, 2023 by SJJHK
hisat2-build DOES NOT work for me!
#402 opened Jan 26, 2023 by zerolinuxbio
1
Question regarding the runtime for hisat-3n-table
#401 opened Jan 18, 2023 by cahn20
mapped read length
#400 opened Jan 18, 2023 by wangjiawen2013
Forcing alignment only to the forward reference for HISAT-3N
#398 opened Dec 7, 2022 by cahn20
1
(ERR): hisat2-align died with signal 6 (ABRT) (core dumped)
#396 opened Nov 12, 2022 by dianzhiyong
3
Any plans for supporting mac arm architecture?
#395 opened Oct 29, 2022 by genzorp
Issue with aligning with hisat2
#394 opened Oct 26, 2022 by alok1922
directional-mapping mode is not consistent is flag and YZ tag.
#393 opened Oct 16, 2022 by y9c
ProTip! Updated in the last three days: updated:>2024-05-05.