change in directory structure

DNA-and-Natural-Algorithms-Group · May 11, 2018 · 548ecf1 · 548ecf1
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diff --git a/examples/papers/README.md → examples/benchmark/README.md b/examples/papers/README.md → examples/benchmark/README.md
@@ -1,20 +1,19 @@
 This directory contains an executable python script:
   * figure_analysis.py
+
 and one library file for each paper, currently:
   * zhang2007.py
   * zhang2009.py
   * zhang2010.py
+  * zhang2010cooperative.py
   * genot2011.py
+  * qian2011.py
   * kotani2017.py
+  * zhang2009_rates.py
+  * dabby2013_rates.py
+
   ...
-soon:
-  * yin2008.py
-  * zhang2010cooperative.py
-  * qian2011.py
-  * groves2015.py
-  * srinivas2017.py
-  * seelig2006.py
 
-In order to (re)produce results, you might want to adapt
-settings in the library files.
+In order to (re)produce results, you might want to adapt settings in the
+library files.
 
diff --git a/examples/papers/dabby2013_rates.py → examples/benchmark/dabby2013_rates.py b/examples/papers/dabby2013_rates.py → examples/benchmark/dabby2013_rates.py
diff --git a/examples/papers/figure_analysis.py → examples/benchmark/figure_analysis.py b/examples/papers/figure_analysis.py → examples/benchmark/figure_analysis.py
diff --git a/examples/papers/genot2011.py → examples/benchmark/genot2011.py b/examples/papers/genot2011.py → examples/benchmark/genot2011.py
diff --git a/examples/papers/kotani2017.py → examples/benchmark/kotani2017.py b/examples/papers/kotani2017.py → examples/benchmark/kotani2017.py
diff --git a/examples/papers/qian2011.py → examples/benchmark/qian2011.py b/examples/papers/qian2011.py → examples/benchmark/qian2011.py
diff --git a/examples/papers/zhang2007.py → examples/benchmark/zhang2007.py b/examples/papers/zhang2007.py → examples/benchmark/zhang2007.py
diff --git a/examples/papers/zhang2009.py → examples/benchmark/zhang2009.py b/examples/papers/zhang2009.py → examples/benchmark/zhang2009.py
diff --git a/examples/papers/zhang2009_rates.py → examples/benchmark/zhang2009_rates.py b/examples/papers/zhang2009_rates.py → examples/benchmark/zhang2009_rates.py
diff --git a/examples/papers/zhang2010.py → examples/benchmark/zhang2010.py b/examples/papers/zhang2010.py → examples/benchmark/zhang2010.py
diff --git a/examples/literature/kotani_hughes_fig2.pil b/examples/literature/kotani_hughes_fig2.pil