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@DNA-and-Natural-Algorithms-Group

DNA and Natural Algorithms Group

Popular repositories

  1. piperine piperine Public

    Piperine compiles abstract CRNs into DNA sequences and estimates how much the generated DNA implementations may participate in undesired DNA-DNA interactions during experiments.

    Python 21 6

  2. multistrand multistrand Public

    Multistrand nucleic acid kinetic simulator

    C++ 16 10

  3. peppercornenumerator peppercornenumerator Public

    domain-level nucleic acid reaction enumeration

    Python 10 6

  4. nuskell nuskell Public

    Nucleic acid strand displacement compiler

    Python 8 3

  5. KinDA KinDA Public

    Kinetic DNA strand displacement analyzer

    Python 8 5

  6. SST-sequence-designer SST-sequence-designer Public

    Sequence designer for single-stranded DNA tiles

    Python 6 4

Repositories

Showing 10 of 16 repositories
  • alhambra Public

    A package for designing and working with algorithmic DNA tile systems.

    Python 0 3 4 4 Updated Feb 12, 2024
  • stickydesign Public

    A package for designing short orthogonal and isoenergetic DNA sequences, intended for DNA tile sticky ends and often used for toeholds.

    Python 2 3 1 0 Updated Jan 5, 2024
  • peppercompiler Public

    A compiler for DNA circuits and tile systems.

    Python 3 MIT 3 0 1 Updated Dec 13, 2023
  • piperine Public

    Piperine compiles abstract CRNs into DNA sequences and estimates how much the generated DNA implementations may participate in undesired DNA-DNA interactions during experiments.

    Python 21 MIT 6 1 1 Updated Dec 13, 2023
  • SST-sequence-designer Public

    Sequence designer for single-stranded DNA tiles

    Python 6 4 2 0 Updated Oct 26, 2023
  • KinDA Public

    Kinetic DNA strand displacement analyzer

    Python 8 5 0 1 Updated Oct 19, 2023
  • multistrand Public

    Multistrand nucleic acid kinetic simulator

    C++ 16 10 0 1 Updated Oct 3, 2023
  • xgrow Public

    Simulator package for algorithmic tile self-assembly models aTAM and kTAM, as a python package.

    C 3 4 2 0 Updated Sep 25, 2023
  • peppercornenumerator Public

    domain-level nucleic acid reaction enumeration

    Python 10 MIT 6 0 0 Updated Aug 23, 2023
  • nuskell Public

    Nucleic acid strand displacement compiler

    Python 8 MIT 3 0 1 Updated Jul 25, 2023

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