Skip to content

Issues: Clinical-Genomics/chanjo

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

27 Open 149 Closed
27 Open 149 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Rename main branch to main
#256 opened May 21, 2024 by dnil
Fix query to avoid "GROUP BY clause; this is incompatible with sql_mode=only_full_group_by" error
#236 opened Oct 13, 2021 by northwestwitch
Time to update transcripts
#225 opened Feb 11, 2021 by 47KW
9
removing samples from db enhancement
#214 opened Mar 3, 2020 by ninanorgren
2
granularity question
#209 opened Jan 28, 2020 by parlar
3
Add MT transcripts to database enhancement
#205 opened Feb 8, 2019 by moonso
3 tasks
Add support for bed formated exon definitions enhancement
#204 opened Feb 8, 2019 by moonso
Chanjo failed to link ccds.15.grch37p13.extended.bed
#200 opened Aug 31, 2018 by biocyberman
Report possible XXY for sex-check
#195 opened Oct 31, 2017 by robinandeer
calculate gene / interval is missing
#190 opened May 29, 2017 by mjlarsen
2
chanjo generates errors instead of help text
#187 opened Apr 24, 2017 by henrikstranneheim
6
Depth for PCR based amplicons(overlap)
#186 opened Apr 23, 2017 by tiehan
Chanjo sex: report ambiguous result
#183 opened Jun 10, 2016 by robinandeer
Wrong strand info in the ccds.15.grch37p13.extended.bed?
#180 opened Apr 7, 2016 by biocyberman
3
joined gene names, a possible pitfall to cause incorrect result?
#178 opened Mar 13, 2016 by biocyberman
2
Use GTF/GFF instead of CCDS bed?
#175 opened Mar 1, 2016 by biocyberman
2
Chanjo-sexcheck - filters on mapping quality?
#173 opened Feb 5, 2016 by henrikstranneheim
Chanjo-sexcheck - does it handle PAR?
#172 opened Feb 5, 2016 by henrikstranneheim
Update bootstrap to select between GRCh37/38
#166 opened Dec 23, 2015 by robinandeer
3
Store expected sex of sample
#164 opened Nov 10, 2015 by robinandeer
2
Do not append to log file for new process
#159 opened Nov 2, 2015 by henrikstranneheim
Capture sambamba output and pipe to logfile
#157 opened Oct 26, 2015 by robinandeer
@moonso
4
Report text
#156 opened Oct 20, 2015 by emmser
return created sample objects
#154 opened Sep 14, 2015 by robinandeer
New store property: @uri
#153 opened Sep 14, 2015 by robinandeer
1
ProTip! Follow long discussions with comments:>50.