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Pull requests: Clinical-Genomics/cg

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Pull requests list

add(functionality for accurate time stamps for flow cell)
#3290 opened May 27, 2024 by ChrOertlin Loading…
15 tasks
19
Rename archive location
#3289 opened May 27, 2024 by islean • Draft
15 tasks
@islean
1
Add cleaning of old case directories
#3284 opened May 27, 2024 by islean Loading…
15 tasks
@islean
12
Add Illumina sample sequencing metrics admin view table Project Task Part of a quarterly project
#3273 opened May 24, 2024 by diitaz93 Loading…
4 of 9 tasks
@diitaz93
7
Add DV200 and Reception QC to delivery report
#3270 opened May 23, 2024 by ivadym Loading…
15 tasks
35
feat(Raredisease) add delivery report
#3267 opened May 23, 2024 by peterpru • Draft
15 tasks
1
add admin view of new tables Project Task Part of a quarterly project
#3265 opened May 23, 2024 by diitaz93 Loading…
6 of 9 tasks
@diitaz93
25
Update filename for software versions
#3240 opened May 17, 2024 by sofstam Loading…
15 tasks
3
Patch setting reference genome for existing samples Needs Refinement
#3231 opened May 15, 2024 by islean Loading…
15 tasks
@islean
11
Add scout support for tomte
#3212 opened May 8, 2024 by fevac • Draft
15 tasks
1
Update use_read_count_threshold for taxprofiler
#3196 opened May 2, 2024 by sofstam Loading…
15 tasks
6
Update the lowest python version to 3.11 to include StrEnum
#3178 opened Apr 25, 2024 by samuell • Draft
12 tasks
1
(feat raredisease) add clinical delivery
#3165 opened Apr 22, 2024 by peterpru • Draft
15 tasks
1
add(create validation case)
#3148 opened Apr 17, 2024 by ChrOertlin • Draft
15 tasks
43
RAREDISEASE: add store, store available and store housekeeper commands raredisease Issues related to nextflow raredisease pipeline
#3128 opened Apr 15, 2024 by rannick Loading…
1 of 15 tasks
@rannick
42
Use sample id instead of case id for rnafusion
#3069 opened Mar 26, 2024 by fevac • Draft
15 tasks
@fevac
1
(feat taxprofiler): Add taxprofiler-past-run-dirs command
#3068 opened Mar 25, 2024 by sofstam Loading…
1 of 15 tasks
19
Enum Example for PhenotypeStatus
#3065 opened Mar 22, 2024 by Vince-janv • Draft
15 tasks
1
feat(enum): Refactor Enhancement
#3060 opened Mar 21, 2024 by henrikstranneheim Loading…
1 of 15 tasks
25
feat(Nanopore) Check manifest file to confirm data transfer Project Task Part of a quarterly project
#2791 opened Dec 29, 2023 by Vince-janv Loading…
1 task done
@Vince-janv
33
Add qc check to mutant before storing
#2664 opened Nov 7, 2023 by beatrizsavinhas • Draft
1 of 15 tasks
@beatrizsavinhas
24
chore: Create add-to-bl.yml
#2644 opened Oct 30, 2023 by pbiology Loading…
1 of 3 tasks
3
Feat(PDC) Add flow cell query sorted by date
#1557 opened Sep 8, 2022 by thelander • Draft
16 tasks
1
@thelander
16
ProTip! What’s not been updated in a month: updated:<2024-04-27.