Skip to content

Issues: sourmash-bio/sourmash

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

643 Open 998 Closed
643 Open 998 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

sourmash release v4.8.9
#3210 opened Jun 10, 2024 by ctb
11 of 15 tasks
enable protein sketches for pangenome hash correlations
#3201 opened Jun 10, 2024 by AnneliektH
4
update docs with pretty pictures from betterplot plugin
#3198 opened Jun 10, 2024 by ctb
1
refactor calculate_gather_stats to avoid calculating intersections twice rust
#3196 opened Jun 9, 2024 by ctb
sourmash_plugin_directsketch - download and sketch data directly plugin a plugin for sourmash!
#3192 opened Jun 6, 2024 by ctb
sourmash sig extract will create empty zip file from directsketch databases
#3191 opened Jun 6, 2024 by ccbaumler
11
Sourmash panicked when it "Couldn't find End Of Central Directory Record"
#3190 opened Jun 5, 2024 by ccbaumler
2
update API documentation around saving/loading sketches for v5
#3189 opened Jun 4, 2024 by ctb
How does Sourmash cope with genome redundancy in GenBank reference genomes
#3188 opened Jun 4, 2024 by Amanda-Biocortex
3
sig filter consumes a lot of memory.
#3187 opened Jun 3, 2024 by ctb
GTDB release 9 - RS220 - databases
#3183 opened Jun 3, 2024 by jorondo1
3
standard plugin utils library - good idea or bad idea?
#3182 opened Jun 3, 2024 by ctb
1
update docs around gather against reference genomes with abundances doc documentation content or issues
#3181 opened May 29, 2024 by ctb
Depleting kmers shared with another reference
#3180 opened May 29, 2024 by Amanda-Biocortex
7
sourmash_plugin_pangenomics - tools for sourmash-based pangenome analyses plugin a plugin for sourmash!
#3179 opened May 28, 2024 by ctb
sourmash_plugin_betterplot - improved plotting/viz and cluster examination plugin a plugin for sourmash!
#3178 opened May 28, 2024 by ctb
sourmash_plugin_dehash - reverse-hash sourmash signatures to retrieve the ACGT k-mers for further investigation or downstream analysis plugin a plugin for sourmash!
#3177 opened May 28, 2024 by ctb
deprecate --name on sig subcommands 5.0 issues to address for a 5.0 release
#3173 opened May 24, 2024 by ctb
classify plant reads in metagenomes
#3172 opened May 24, 2024 by gabridinosauro
Custom alphabet or moltype? enhancement
#3171 opened May 21, 2024 by olgabot
1
ANI calculation
#3170 opened May 21, 2024 by Amanda-Biocortex
2
Implement a SOCKS interface plugin
#3163 opened May 16, 2024 by luizirber
Application of f_unique_to_query and threshold_bp
#3154 opened May 13, 2024 by Amanda-Biocortex
5
detecting and removing microbial contamination from human WGS - info, tutorial, etc.
#3151 opened May 11, 2024 by ctb
add some rust developer docs!
#3150 opened May 10, 2024 by ctb
3
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.