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Tcl blobulation #456

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Tcl blobulation #456

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@RL0109 RL0109 commented Apr 1, 2024

See discussion in slack for changes. Note that normalized hydropathy scales has to be in the same directory as blobulation.tcl.

Ryan Lamb added 14 commits March 12, 2024 16:18
Ryan Lamb and others added 23 commits April 4, 2024 17:38
removed diagnostic puts
4c59af5
removed more diagnostic puts, renamed variable names for clarity
eab750c
Removed more diagnostic puts, renamed variable and proc names for cla…
36bc598 
…rity
changed variable names and fixed indentation errors
ff50c2b
fixed more indentation errors
0ae20bd
Changed Chain variable to singleChain to clarify it's use
230652f
removed puts messages during successfully blobulation proc
5971143
Changed documentation to be outside of the proc following normal TCL …
d92f3ce 
…script standards, added proc documentation for blobulateChain
Changed lower variable name to nocaseMolID for clarity of variable
58dcb29
Added file header
ad1d37d
Changed variable names and changed for loop to foreach
19e1c79
fixed variable names
a809400
Merge remote-tracking branch 'refs/remotes/origin/tcl_blobulation_cha…
a63f411 
…in' into tcl_blobulation_chain
added user2 value to find specific blobs
ec1eac1
implemented chain index, ignore the time
4515f36
Added code that gives a user3 which tracks occurances of each blob
028e6cb
removed puts statements
1f30958
added proc headerfor blob index
6e7cb72
Previously, blob representations have only been accounted for the alp…
4fb8366 
…ha carbon of each amino acid, entire residue is now defined as a blob
Fixed user value bug, compartmentalized user assignments
b87b73e
Fixed issue preventing non chain proteins from being blobulated
2e874f6
Removed puts statement and file creation, file creation was for debug…
3345a37 
…ging and was left by accident
@RL0109
Merge pull request #470 from BranniganLab/tcl_blobulation_chain
497c32e 
Tcl blobulation chain
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@EzryStIago EzryStIago EzryStIago left review comments

@cpitman-11 cpitman-11 Awaiting requested review from cpitman-11

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@RL0109 @EzryStIago