Brannigan Lab
Pinned
Repositories
- Communications Public
An archival repository for all *completed* communications produced by the Brannigan Lab - posters/presentations, grants, manuscripts, theses, etc.
- blobulator Public
Blob-based analysis of protein sequences - available online at blobulator.branniganlab.org and as an open-source tool.
- safep Public
Tools for Analyzing and Debugging (SA)FEP calculations. See also the SAFEP Tutorial: https://github.com/jhenin/SAFEP_tutorial/tree/main Documentation: https://safep-alchemy.readthedocs.io/en/latest/
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- density_threshold_affinity Public
Scripts to Assist Density Threshold Affinity Analysis - a method for obtaining free energies of protein-lipid binding. Originally described in: https://pubs.aip.org/aip/jcp/article/154/18/185102/200265/Spontaneous-lipid-binding-to-the-nicotinic
- densitymap Public
This project has moved to: https://github.com/BranniganLab/density_threshold_affinity. VMD and python tools for calculating and plotting 2D lipid density maps.
- ELIC-phospholipid-identification Public
Data and Analyses related to "Structural mechanism of leaflet-specific phospholipid modulation of a pentameric ligand-gated ion channel". Results in preprint (bioRxiv) 2022. doi: https://doi.org/10.1101/2022.06.07.494883
- lipid-monte-carlo Public
Monte Carlo simulation of the Brannigan&Brown flexible lipid model. This is C code that GB wrote primarily as a graduate student.
