Merge pull request #17 from zoccoler/clean_unnecessary_comments

Clean unnecessary comments

BSSD.ipynb

@@ -155,7 +155,6 @@
     "    nregions = ROIs_means_corrected.shape[1]\n",
     "    if np.any(inactive_msk)==None:\n",
     "        inactive_msk = np.ones_like(time,dtype=bool)\n",
-    "#     for m,t,cnt,idx in zip(ROIs_means_corrected,time,range(len(time)),inactive_msk):\n",
     "    noise = np.zeros((nregions,))\n",
     "    for j in range(nregions):\n",
     "        #Get NOISE POWER\n",

Examples/Example_Cell1.ipynb

@@ -770,7 +770,7 @@
     "ax.axis('off')\n",
     "contour = mes.build_contour(mask_list_EP[0])\n",
     "ax.imshow(mask_list_EP[0],cmap='gray',alpha=0.3)\n",
-    "# ax.plot(contour[:,1],contour[:,0],color='yellow',lw=2)"
+    "ax.plot(contour[:,1],contour[:,0],color='yellow',lw=2)"
    ]
   },
   {
@@ -1471,9 +1471,6 @@
     "    '''Generates a gray contour from binary masks and extracts the contour'''\n",
     "    import scipy.ndimage as sm\n",
     "    import numpy as np\n",
-    "#    import matplotlib.pyplot as plt\n",
-    "#    msk_d = sm.binary_dilation(msk,structure=np.ones((3,3)),iterations=1)\n",
-    "#    msk_contour_gray = msk_d.astype(int) + msk.astype(int)\n",
     "    from skimage import measure\n",
     "    contour = measure.find_contours(msk, 0.8, positive_orientation = 'high')\n",
     "    \n",

Examples/Example_Cell2.ipynb

@@ -1165,9 +1165,6 @@
     "    '''Generates a gray contour from binary masks and extracts the contour'''\n",
     "    import scipy.ndimage as sm\n",
     "    import numpy as np\n",
-    "#    import matplotlib.pyplot as plt\n",
-    "#    msk_d = sm.binary_dilation(msk,structure=np.ones((3,3)),iterations=1)\n",
-    "#    msk_contour_gray = msk_d.astype(int) + msk.astype(int)\n",
     "    from skimage import measure\n",
     "    contour = measure.find_contours(msk, 0.8, positive_orientation = 'high')\n",
     "    \n",

Examples/Example_Cell3.ipynb

@@ -1160,9 +1160,6 @@
     "    '''Generates a gray contour from binary masks and extracts the contour'''\n",
     "    import scipy.ndimage as sm\n",
     "    import numpy as np\n",
-    "#    import matplotlib.pyplot as plt\n",
-    "#    msk_d = sm.binary_dilation(msk,structure=np.ones((3,3)),iterations=1)\n",
-    "#    msk_contour_gray = msk_d.astype(int) + msk.astype(int)\n",
     "    from skimage import measure\n",
     "    contour = measure.find_contours(msk, 0.8, positive_orientation = 'high')\n",
     "    \n",

Examples/Example_Cell4.ipynb

@@ -1160,9 +1160,6 @@
     "    '''Generates a gray contour from binary masks and extracts the contour'''\n",
     "    import scipy.ndimage as sm\n",
     "    import numpy as np\n",
-    "#    import matplotlib.pyplot as plt\n",
-    "#    msk_d = sm.binary_dilation(msk,structure=np.ones((3,3)),iterations=1)\n",
-    "#    msk_contour_gray = msk_d.astype(int) + msk.astype(int)\n",
     "    from skimage import measure\n",
     "    contour = measure.find_contours(msk, 0.8, positive_orientation = 'high')\n",
     "    \n",

Examples/Example_Cell5.ipynb

@@ -1170,9 +1170,6 @@
     "    '''Generates a gray contour from binary masks and extracts the contour'''\n",
     "    import scipy.ndimage as sm\n",
     "    import numpy as np\n",
-    "#    import matplotlib.pyplot as plt\n",
-    "#    msk_d = sm.binary_dilation(msk,structure=np.ones((3,3)),iterations=1)\n",
-    "#    msk_contour_gray = msk_d.astype(int) + msk.astype(int)\n",
     "    from skimage import measure\n",
     "    contour = measure.find_contours(msk, 0.8, positive_orientation = 'high')\n",
     "    \n",