v2.3.0

What's Changed

Fix some bugs introduced in v2.2.0 while trying to fix the uneven pvalues/relevant interaction files with the new cellphonedb v5 outputs

Added a new option to heatmap to allow slicing of only relevant cell types.

• incorrect column being used for cellphonedb v5 output by @zktuong in #95
• fix missing columns by @zktuong in #97
• add celltypes option to heatmap by @zktuong in #98
• revert missing column changes by @zktuong in #100
• fix heatmap if cell type combination not symmetrical by @zktuong in #102
• Fix search pattern by @zktuong in #103
• Fix uneven rows and columns by @zktuong in #104
• remove prep dimensions by @zktuong in #105

Full Changelog: v2.1.0...v2.3.0

v2.1.0

Mostly minor bug fixing to deal with indexing proglem

What's Changed

• Fix bug with degs analysis by @zktuong in #86
• fix duplicate rownames introduced in CellPhoneDB v5 by @zktuong in #90

Full Changelog: v2.0.0...v2.1.0

v2.0.0

What's Changed

Some bug fixes, new vignette and preparation for upcoming cellphonedb release

Detailed notes

• Update plot_cpdb_heatmap.R by @fentouxungui in #65
• add symmetrical to heatmap by @zktuong in #70
• fix the output table format by @zktuong in #72
• Update plot_cpdb.R by @polojacky in #75
• attempt to flip the colour order by @zktuong in #79
• Refactor prep by @zktuong in #81

New Contributors

• @fentouxungui made their first contribution in #65
• @polojacky made their first contribution in #75

Full Changelog: v1.2.3...v2.0.0

v1.2.3

What's Changed

• Add combine_cpdb utility function by @zktuong in #54
• Fix bug heatmap by @Tu-feng in #59

New Contributors

• @Tu-feng made their first contribution in #59

Full Changelog: v1.2.2...v1.2.3

v1.2.2

What's Changed

• Fix plot cpdb highlight by @zktuong in #45
• Update plot_cpdb_heatmap.R by @zktuong in #46
• Update README.md by @zktuong in #47
• add custom_gene_family option by @zktuong in #53

Full Changelog: v1.2.0...v1.2.2

v.1.2.0

Some bug fixes and added plot_cpdb_heatmap.

What's Changed

• Plot cpdb heatmap by @zktuong in #43

Full Changelog: v1.1.23...v1.2.0

v1.1.23

What's Changed

• Update r.yml by @zktuong in #36
• plot_cpdb4 by @zktuong in #37
• fix by @zktuong in #39
• more bugs by @zktuong in #40
• fix #41 by @zktuong in #42

Full Changelog: v1.1.20...v1.1.23

v1.1.20

What's Changed

• Plot cpdb3 by @zktuong in #35

• new function plot_cpdb3
• deprecate functions that relied on Seurat because it always break my tests when it gets updated
• deprecate compare_cpdb until i can work out why the tests are failing. in the mean time, the function will still be available from compare_cpdb branch.

Full Changelog: v1.1.19...v1.1.20

v1.1.19

What's Changed

• Update on line 66 by @colin-leeyc in #28
• add example image by @zktuong in #29
• Update plot_cpdb.R by @zktuong in #30
• Qol update by @zktuong in #32
• Compare cellphonedb and version 3 compatibility by @zktuong in #33

New Contributors

• @colin-leeyc made their first contribution in #28

Full Changelog: v1.1.16...v1.1.19

1.1.16

Updated plot_cpdb2 to make it more usable.

What's Changed

• add correlationSpot function by @zktuong in #20
• Rework plot_cpdb2 by @zktuong in #24
• Fix plot cpdb2 by @zktuong in #26

Full Changelog: 1.1.10...v1.1.16