v0.3.3

What's Changed

• Mainly updates and bug fixes to tl.clone_overlap and pl.clone_overlap.
• simplified pre-processing functions to call command line arguments instead of running within the code.

Detailed notes:

• Update docs for clone overlap by @zktuong in #276
• Allow additional arguments in define_clones by @zktuong in #280
• add an if statement to check if actor is dependabot by @zktuong in #289
• pip dev(deps-dev): update sphinx-autodoc-typehints requirement from <=1.23.0 to <=1.23.3 by @dependabot in #284
• pip dev(deps-dev): update sphinx-rtd-theme requirement from <=1.2.0 to <=1.2.2 by @dependabot in #285
• pip dev(deps-dev): update readthedocs-sphinx-ext requirement from <=2.2.0 to <=2.2.2 by @dependabot in #286
• pip dev(deps-dev): update nbsphinx requirement from <=0.9.1 to <=0.9.2 by @dependabot in #287
• enable auto-merge for dependabot by @zktuong in #290
• refactoring how external scripts and locations are called by @zktuong in #288
• fix reassign_alleles by @zktuong in #293
• remove deprecated function from docs by @zktuong in #297
• pip dev(deps-dev): update sphinx-autodoc-typehints requirement from <=1.23.3 to <=1.24.0 by @dependabot in #296
• fix weekly tests by @zktuong in #301
• pip prod(deps): update mizani requirement from <0.10.0 to <0.11.0 by @dependabot in #302
• add options to plotting clone overlap by @zktuong in #307
• add requirements.txt by @zktuong in #309
• should be cartesian product instead of combination by @zktuong in #312

Full Changelog: v0.3.2...v0.3.3