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v0.3.3

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@zktuong zktuong released this 12 Sep 10:37
· 77 commits to master since this release
b0a094c

What's Changed

  • Mainly updates and bug fixes to tl.clone_overlap and pl.clone_overlap.
  • simplified pre-processing functions to call command line arguments instead of running within the code.

Detailed notes:

  • Update docs for clone overlap by @zktuong in #276
  • Allow additional arguments in define_clones by @zktuong in #280
  • add an if statement to check if actor is dependabot by @zktuong in #289
  • pip dev(deps-dev): update sphinx-autodoc-typehints requirement from <=1.23.0 to <=1.23.3 by @dependabot in #284
  • pip dev(deps-dev): update sphinx-rtd-theme requirement from <=1.2.0 to <=1.2.2 by @dependabot in #285
  • pip dev(deps-dev): update readthedocs-sphinx-ext requirement from <=2.2.0 to <=2.2.2 by @dependabot in #286
  • pip dev(deps-dev): update nbsphinx requirement from <=0.9.1 to <=0.9.2 by @dependabot in #287
  • enable auto-merge for dependabot by @zktuong in #290
  • refactoring how external scripts and locations are called by @zktuong in #288
  • fix reassign_alleles by @zktuong in #293
  • remove deprecated function from docs by @zktuong in #297
  • pip dev(deps-dev): update sphinx-autodoc-typehints requirement from <=1.23.3 to <=1.24.0 by @dependabot in #296
  • fix weekly tests by @zktuong in #301
  • pip prod(deps): update mizani requirement from <0.10.0 to <0.11.0 by @dependabot in #302
  • add options to plotting clone overlap by @zktuong in #307
  • add requirements.txt by @zktuong in #309
  • should be cartesian product instead of combination by @zktuong in #312

Full Changelog: v0.3.2...v0.3.3