Weekly Test Singularity Build #63
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| name: Weekly Test Singularity Build | |
| on: | |
| schedule: | |
| # every Sunday at 0:00 | |
| - cron: "0 0 * * 0" | |
| jobs: | |
| container: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out code for the container build | |
| uses: actions/checkout@v3 | |
| - name: Setup Singularity | |
| uses: singularityhub/install-singularity@main | |
| - name: Extract repository location | |
| shell: bash | |
| run: | | |
| echo "location=$(echo " - git+https://www.github.com/${GITHUB_REPOSITORY}@${GITHUB_REF#refs/heads/}")" >> $GITHUB_OUTPUT | |
| id: extract_location | |
| - name: Build Container | |
| run: | | |
| cd container | |
| echo '${{ steps.extract_location.outputs.location }}' >> environment_test.yml | |
| sudo -E singularity build --notest sc-dandelion.sif sc-dandelion_test.def | |
| - name: Test Container | |
| run: | | |
| cd container | |
| sudo singularity test --writable-tmpfs sc-dandelion.sif | |
| singularity run -B $PWD sc-dandelion.sif dandelion-preprocess --help |