Parallel Programming Assignment

PR1

MPI Programming

• Problem 1:
  • Matrix-vector multiplication: row-wise, column-wise, checkerboard decomposition algorithm
  • Square matrix multiplication: row-wise, Cannon, Fox, DNS algorithm
• Problem 2:
  • Process Topologies: creation & access, Cannon algorithm
  • Dynamic Process Generation: dynamic row-wise matrix multiplication
• Problem 3:
  • Conjugate Gradient Method
• Problem 4:
  • Basic molecular dynamic experiments with AMBER 14 (on CPU cluster)

PR2

Gaussian Blur experiments with OpenCL

PR3

CUDA programming

• Problem 1:

  • Introduction to Block & Grid
  • Array increment

• Problem 2:

  • Matrix multiplication: basic & CUBLAS
  • Matrix multiplication: GPU shared & global memory optimization

• Problem 3:

  • Conjugate gradient descent

• Problem 4:

  • Basic molecular dynamic experiments with AMBER 14: CPU cluster vs GPU

Files

• Presentation (Indonesian) http://1drv.ms/1THKxSy
• Report (Indonesian) https://github.com/yohanesgultom/parallel-programming-assignment/blob/master/doc/laporan.pdf

Guide on nbcr-233.ucsd.edu Cluster

• Submitting job http://nbcr-233.ucsd.edu/roll-documentation/sge/6.2/submitting-batch-jobs.html
• Job monitoring http://nbcr-233.ucsd.edu/roll-documentation/sge/6.2/monitoring-sge.html