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  1. swne swne Public

    Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

    R 102 20

  2. perturbLM perturbLM Public

    Linear model for analyzing genetic perturbations with scRNA-seq readouts

    R 1 2

  3. teratoma-analysis-code teratoma-analysis-code Public

    Code to reproduce the analysis seen in McDonald, Wu et al. Cell, 2020 (https://doi.org/10.1016/j.cell.2020.10.018)

    R 5 2

  4. SEUSS-Analysis SEUSS-Analysis Public

    Code to analyze effects of gene overexpression on the transcriptome of human stem cells

    R 2