Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
xihaoli committed Dec 11, 2023
1 parent 2d5bd7d commit f9a4ea5
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Expand Up @@ -15,7 +15,7 @@ This is an R package for summarizing and visualizing association analysis result
For optimal computational performance, it is recommended to use an R version configured with the Intel Math Kernel Library (or other fast BLAS/LAPACK libraries). See the <a href="https://software.intel.com/en-us/articles/using-intel-mkl-with-r">instructions</a> on building R with Intel MKL.
## Dependencies
STAARpipelineSummary imports R packages <a href="https://cran.r-project.org/web/packages/Rcpp/index.html">Rcpp</a>, <a href="https://github.com/xihaoli/STAAR">STAAR</a>, <a
href="https://github.com/xihaoli/MultiSTAAR">MultiSTAAR</a>, <ahref="https://github.com/xihaoli/STAARpipeline">STAARpipeline</a>, <a href="https://github.com/zilinli1988/SCANG">SCANG</a>, <a href="https://cran.r-project.org/web/packages/dplyr/index.html">dplyr</a>, <a href="https://bioconductor.org/packages/release/bioc/html/SeqArray.html">SeqArray</a>, <a href="https://bioconductor.org/packages/release/bioc/html/SeqVarTools.html">SeqVarTools</a>, <a href="https://bioconductor.org/packages/release/bioc/html/GenomicFeatures.html">GenomicFeatures</a>, <a href="https://bioconductor.org/packages/release/data/annotation/html/TxDb.Hsapiens.UCSC.hg38.knownGene.html">TxDb.Hsapiens.UCSC.hg38.knownGene</a>, <a href="https://cran.r-project.org/web/packages/GMMAT/index.html">GMMAT</a>, <a href="https://bioconductor.org/packages/release/bioc/html/GENESIS.html">GENESIS</a>, <a href="https://cran.r-project.org/web/packages/Matrix/index.html">Matrix</a>, <a href="https://cran.r-project.org/web/packages/lattice/index.html">lattice</a>. These dependencies should be installed before installing STAARpipelineSummary.
href="https://github.com/xihaoli/MultiSTAAR">MultiSTAAR</a>, <a href="https://github.com/xihaoli/STAARpipeline">STAARpipeline</a>, <a href="https://github.com/zilinli1988/SCANG">SCANG</a>, <a href="https://cran.r-project.org/web/packages/dplyr/index.html">dplyr</a>, <a href="https://bioconductor.org/packages/release/bioc/html/SeqArray.html">SeqArray</a>, <a href="https://bioconductor.org/packages/release/bioc/html/SeqVarTools.html">SeqVarTools</a>, <a href="https://bioconductor.org/packages/release/bioc/html/GenomicFeatures.html">GenomicFeatures</a>, <a href="https://bioconductor.org/packages/release/data/annotation/html/TxDb.Hsapiens.UCSC.hg38.knownGene.html">TxDb.Hsapiens.UCSC.hg38.knownGene</a>, <a href="https://cran.r-project.org/web/packages/GMMAT/index.html">GMMAT</a>, <a href="https://bioconductor.org/packages/release/bioc/html/GENESIS.html">GENESIS</a>, <a href="https://cran.r-project.org/web/packages/Matrix/index.html">Matrix</a>, <a href="https://cran.r-project.org/web/packages/lattice/index.html">lattice</a>. These dependencies should be installed before installing STAARpipelineSummary.
## Installation
```
library(devtools)
Expand Down

0 comments on commit f9a4ea5

Please sign in to comment.