STAAR v0.9.7

R/STAAR_Binary_SPA.R

@@ -201,7 +201,7 @@ STAAR_Binary_SPA <- function(genotype,obj_nullmodel,annotation_phred=NULL,
 		  muhat <- obj_nullmodel$fitted.values
 
 		  ## Normal
-		  X <- model.matrix(obj_nullmodel)
+		  X <- obj_nullmodel$X
 		  working <- obj_nullmodel$weights
 		  sigma <- sqrt(summary(obj_nullmodel)$dispersion)
 		  if(obj_nullmodel$family[1] == "binomial"){

README.md

@@ -30,7 +30,7 @@ Please see the <a href="docs/STAAR_manual.pdf">**STAAR** user manual</a> for det
 ## Data Availability
 The whole-genome functional annotation data assembled from a variety of sources and the precomputed annotation principal components are available at the [Functional Annotation of Variant - Online Resource (FAVOR)](https://favor.genohub.org) site and [FAVOR Essential Database](https://doi.org/10.7910/DVN/1VGTJI).
 ## Version
-The current version is 0.9.7 (November 1, 2023).
+The current version is 0.9.7 (January 22, 2024).
 ## Citation
 If you use **STAAR** for your work, please cite: