Releases: xgi-org/xgi
Releases · xgi-org/xgi
v0.8.5
- Added the ability to draw hypergraphs and dihypergraphs as bipartite graphs, added a bipartite spring layout, and added the ability to place edge markers at the barycenters of the positions of their member nodes with the
edge_positions_from _barycenters
function #492 (@nwlandry). - Updated the documentation to include (1) new relevant software packages organized by language, (2) documentation for the encapsulation DAG, (3) new gallery examples, (4) new projects using XGI, and (5) links to the XGI JOSS paper #529 (@nwlandry).
- More intelligible warning for unknown type of degree assortativity #533 (@doabell).
- Formatted the numbers in the XGI-DATA table by locale #532 (@doabell).
- Added a hypergraph random edge shuffle method #531 (@doabell).
- Updated the return type of Katz centrality to be a dictionary and added it as a NodeStat #530 (@nwlandry).
- Made
degree_assortativity
with theexact=True
keyword reproducible #526 (@nwlandry).
v0.8.4
- Added the ability to supply user-defined functions to
filterby
andfilterby_attr
#524 (@nwlandry). - Reorganized the stats tests #525 (@nwlandry).
- Added a recipe for finding the maximal indices based on statistics #522 (@nwlandry).
- Added the ability to argsort stats #521 (@nwlandry).
- Added recipes for flagged triangular lattices and avg. shortest path length #513 (@thomasrobiglio).
- Add
argmax
andargmin
to the stats interface #518 (@nwlandry). - Updated the list of projects using XGI #519 (@nwlandry).
- Fixed the multilayer warning (Issue #515) that occurs when specifying colors for each node #517 (@nwlandry).
v0.8.3
v0.8.2
- Added an XGI-DATA page to ReadTheDocs with network statistics #496 (@nwlandry).
- Added syntax highlighting in the tutorials #497 (@thomasrobiglio).
- Changed the xgi-data index location to Github to support the move to Zenodo-hosted datasets #494 (@nwlandry)
- Update the list of publications using XGI #493 (@nwlandry).
v0.8.1
- Added the ability to draw a convex hull as an option in
draw_hyperedges
#491 (@maximelucas). - Fixed sphinx documentation errors #487 (@nwlandry).
- Rewrote the
draw_multilayer
function #486 (@maximelucas). - Updated the "Projects Using XGI" page #489 (@nwlandry).
- Added support for Python 3.12 #488 (@nwlandry).
v0.8
- Made
IDViews
respect edge insertion order in thefrom_view
method #482 (@nwlandry). - Fixed issues in drawing functions #476 (@maximelucas).
- Fixed Issue #480 which raised an error when users attempted to set edge properties with an id:value dictionary with an attribute name #481 (@nwlandry).
- Made minor changes and corrections to the tutorials in the documentation #479 (@thomasrobiglio).
- Rewrote the
draw_hyperedges()
function to utilize native matplotlib functionality and be more consistent #456 (@maximelucas). - Integrated the tutorials into the documentation #457 (@thomasrobiglio).
- Added an
s
parameter to theneighbors
method for edge overlap #450 (@nwlandry). - Fixed Issue #468 so that the
ashist
method doesn't try to create multiple bins for stats with a single unique value #473 (@nwlandry).
v0.7.4
- Response to PyOpenSci review, fixing Issue #453 among other things #470 (@nwlandry).
- Fixed issues created from merging PR #380 #471 (@nwlandry).
- Added the capability to generate the complement of a hypergraph #380 (@acombretrenouard).
- Fixed the directionality of BiGG reactions (See Issue #458) #459 (@pietrotraversa, @nwlandry).
- Fixed Issue #461 #462 (@maximelucas).
v0.7.3
- Added the
ashist()
method to the stats module#452 (@nwlandry). - Feature: return the node collections to allow a colorbar corresponding to node colors #441 (@maximelucas).
- Added tutorials: XGI in X minutes #415 (@thomasrobiglio).
- Fixed an empty edge error when loading BiGG data #447 (@nwlandry).
- Changed rho to an optional arg in the HPPM method #446 (@nwlandry).
- Added a
cleanup()
method toDiHypergraph
andSimplicialComplex
and added aconnected
argument to theHypergraph
method #440 (@nwlandry). - Added encapsulation DAG functionality #444 (@tlarock).
- Refactored the multilayer drawing function to be more standard and added headers to convert module #434 (@nwlandry).
- Added the
weights
option toto_line_graph()
function. #427 (@tlarock). - Added the ability for users to access the optional arguments of NetworkX layout functions. #439 (@nwlandry).
- Fixed Issue #331 #438 (@maximelucas).
- Refactored the draw module #435 (@maximelucas).
- Feature: added the
aspect
keyword for drawing, addressing Issue #430 #432 (@maximelucas).
v0.7.2
- Listed the available statistics in the stats module #405 (@thomasrobiglio).
- Implemented functions from this article #400 (@maximelucas).
- Reorganized the
convert
module #423 (@nwlandry). - Refactored the core data structures and removed the
function.py
file, moving the functions to other locations #412 (@nwlandry). - Small documentation fixes #422 (@nwlandry).
- Added a webpage listing projects and papers that use XGI #416 (@nwlandry).
- Added an optinion so that only the text in the Jupyter Notebooks counts towards the line counts #417 (@nwlandry).
- Fixed the
_color_arg_to_dict
and_scalar_arg_to_dict
functions so they are more consistent #402 (@nwlandry). - Fixed the IDView.ids type #406 (@leotrs).
v0.7.1
- Fix: Converting from a
SimplicialComplex
to aHypergraph
now adds all of its faces to the hypergraph, not just the maximal faces. Added unit tests for converting betweenHypergraph
andSimplicialComplex
classes #399 (@thomasrobiglio). - Moved the list of contributors from the readthedocs, license, setup, etc. into a dedicated file so that when contributors join or leave, we only update a single file. Renamed
CONTRIBUTING.md
toHOW_TO_CONTRIBUTE.md
. #401 (@nwlandry). - Added the ability to convert from a simplex dict to a
SimplicialComplex
#397 (@thomasrobiglio). - Updated index.rst to add the
DiHypergraph
class to the quick references #392 (@thomasrobiglio). - Addressed Issue #393 by adding the ability for
draw_hypergraph()
to handle nodes with non-integer IDs and isolated nodes. #394 (@thomasrobiglio). - Fixed the short description and landing page on PyPI so that it is more readable #391 (@nwlandry).