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GUI to Classify Pathology Slides for Neural Net Training

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xHeliotrope/slide_classifier

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Slide Classification App

Install necessary software

  • Install Docker -> for running the app in a platform-independant manner
  • Install Docker Compose -> manages connecting multiple services (database, http server)

Getting the app running

Once Docker Compose is installed, get in a unix-like terminal of your choice. If on windows, I suggest git bash.

Run

docker-compose up -d

to start the database and app containers. When this script is completed, the following can be run:

docker-compose run --rm web python manage.py migrate

If the machine running the app loses power or stops running the application, you can run

docker-compose up -d

Tested on:

  • - Linux - Ubuntu
  • - MacOS - Mojave
  • - Windows - 10