Pinned

1. seung-lab/connected-components-3d seung-lab/connected-components-3d Public

   Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

   C++ 330 41

2. seung-lab/cloud-files seung-lab/cloud-files Public

   Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

   Python 36 8

3. seung-lab/euclidean-distance-transform-3d seung-lab/euclidean-distance-transform-3d Public

   Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

   C++ 218 36

4. seung-lab/cloud-volume seung-lab/cloud-volume Public

   Read and write Neuroglancer datasets programmatically.

   Python 125 41

5. seung-lab/kimimaro seung-lab/kimimaro Public

   Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

   Python 122 20

6. seung-lab/igneous seung-lab/igneous Public

   Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

   Python 37 15