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Welcome to the pyani wiki!

If you have suggestions on improving the content, clarity, or accessibility of this wiki, please start a new Discussion (if, for instance, you need input from maintainers on the best solution) or create a new Issue (if you have a concrete idea that can be implemented).

FAQ

This section of the home page contains some standard answers to questions that recur on the pyani repository Issues page.

• mummer/nucmer fails with bad interpreter
• fastANI installation (via conda) will fail for Python 3.9 on macOS

Development

This section of the home page is a dynamic document, recording coding guidance, style choices, and workflows we use on the pyani project. This is intended to improve consistency of process, and to help new contributors onboard and understand the choices we've made.

• Documentation
• Working in pyani v0.2 vs v0.3
• GitHub
  • Raising an Issue
  • Handling an Issue
  • Handling a Pull Request
• Testing
  • Continuous Integration
• Roadmap
• Guidance for developers
  • Style
  • How-tos
    • Write a new submodule (subcommand)