Add pyani evolve
command.
#180
Labels
enhancement
something we'd like pyani to do that it doesn't already
interface
issues related to how the user tells pyani to do something
method
the issue relates to how results are calculated
Projects
Milestone
Summary:
We need a way to generate benchmark test data to ensure consistency and accuracy of
pyani
output.Description:
The initial plan is to take a single genome sequence as input (this may be random...) and an accompanying network representing the input sequence's evolution. Each edge describes a process happening to an input genome, and can be any of several optional processes (with appropriate parameterisation):
Starting from the input genome, these processes are applied as intended in the graph.
This will generate a set of input genomes for testing
pyani
where we know the evolutionary history of every "leaf node" sequence, and can interpret output accordingly. The data can then be used to benchmark ANI, k-mer and other genome analyses.pyani Version:
Planned for v0.3+
The text was updated successfully, but these errors were encountered: