msprime

msprime is a population genetics simulator based on tskit. Msprime can simulate random ancestral histories for a sample of individuals (consistent with a given demographic model) under a range of different models and evolutionary processes. Msprime can also simulate mutations on a given ancestral history (which can be produced by msprime or other programs supporting tskit) under a variety of genome sequence evolution models.

Please see the documentation for more details, including installation instructions.

Name		Name	Last commit message	Last commit date
Latest commit History 4,004 Commits
.circleci		.circleci
.github/workflows		.github/workflows
benchmarks		benchmarks
containers		containers
data		data
docs		docs
git-submodules		git-submodules
lib		lib
msprime		msprime
notebooks		notebooks
py_algorithms		py_algorithms
requirements		requirements
tests		tests
.codecov.yml		.codecov.yml
.flake8		.flake8
.gitignore		.gitignore
.gitmodules		.gitmodules
.mergify.yml		.mergify.yml
.pre-commit-config.yaml		.pre-commit-config.yaml
CHANGELOG.md		CHANGELOG.md
CITATION.md		CITATION.md
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
Makefile		Makefile
README.md		README.md
algorithms.py		algorithms.py
asv.conf.json		asv.conf.json
consistency_test.py		consistency_test.py
joined_ped.ts		joined_ped.ts
lwt_interface		lwt_interface
msp_dev.py		msp_dev.py
mspms_dev.py		mspms_dev.py
pyproject.toml		pyproject.toml
setup.cfg		setup.cfg
setup.py		setup.py
sims.ipynb		sims.ipynb
stress_lowlevel.py		stress_lowlevel.py
verification.py		verification.py

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weissmanlab/msprime-c

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